2018

Balik-Meisner M, Truong L, Scholl EH, Tanguay RL, Reif DMPopulation genetic diversity in zebrafish lines. Mamm Genome. 2018 Feb;29(1-2):90-100

Countryman P, Fan Y, Gorthi A, Pan H, Strickland J, Kaur P, Wang X, Lin J, Lei X, White C, You C, Wirth N, Tessmer I, Piehler J, Riehn R, Bishop AJR, Tao YJ, Wang H. Cohesin SA2 is a sequence-independent DNA-binding protein that recognizes DNA replication and repair intermediates. J Biol Chem. 2018 Jan 19;293(3):1054-1069.

Gomih A, Smith JS, North KE, Hudgens MG, Brewster WR, Huang Z, Skaar D, Valea F, Bentley RC, Vidal AC, Maguire RL, Jirtle RL, Murphy SK, Hoyo CDNA methylation of imprinted gene control regions in the regression of low-grade cervical lesions. Int J Cancer. 2018 Feb 28

Green AJ, Hoyo C, Mattingly CJ, Luo Y, Tzeng JY, Murphy SK, Buchwalter DB, Planchart ACadmium exposure increases the risk of juvenile obesity: a human and zebrafish comparative study. Int J Obes (Lond). 2018 Feb 20

Marvel SW, To K, Grimm FA, Wright FA, Rusyn I, Reif DMToxPi Graphical User Interface 2.0: Dynamic exploration, visualization, and sharing of integrated data models. BMC Bioinformatics. 2018 Mar 5;19(1):80.

Planchart A, Green A, Hoyo C, Mattingly CJHeavy Metal Exposure and Metabolic Syndrome: Evidence from Human and Model System Studies. Curr Environ Health Rep. 2018 Mar;5(1):110-124.

Rock KD, Horman B, Phillips AL, McRitchie SL, Watson S, Deese-Spruill J, Jima D, Sumner S, Stapleton HM, Patisaul HBEDC IMPACT: Molecular effects of developmental FM 550 exposure in Wistar rat placenta and fetal forebrain. Endocr Connect. 2018 Feb;7(2):305-324.

2017

Adkins NL, Swygert SG, Kaur P, Niu H, Grigoryev SA, Sung P, Wang H, Peterson CL. Nucleosome-like, Single-stranded DNA (ssDNA)-Histone Octamer Complexes and the Implication for DNA Double Strand Break Repair. The Journal of biological chemistry. 2017 March 31;292(13):5271-5281.

Arambula SE, Belcher SM, Planchart A, Turner SD, Patisaul HB. Impact of Low Dose Oral Exposure to Bisphenol A (BPA) on the Neonatal Rat Hypothalamic and Hippocampal Transcriptome: A CLARITY-BPA Consortium Study. Endocrinology. 2016 October;157(10):3856-3872.

Arambula SE, Jima D, Patisaul HB. Prenatal bisphenol A (BPA) exposure alters the transcriptome of the neonate rat amygdala in a sex-specific manner: a CLARITY-BPA consortium study. Neurotoxicology. 2017 October 28. PubMed PMID: 29097150

Arambula SE, Fuchs J, Cao J, Patisaul HBEffects of Perinatal Bisphenol A Exposure on the Volume of Sexually-dimorphic Nuclei of Juvenile Rats: A CLARITY-BPA Consortium Study. Neurotoxicology. 2017 Sep 7. pii: S0161-813X(17)30178-X.

Baldwin KR, Phillips AL, Horman B, Arambula SE, Rebuli ME, Stapleton HM, Patisaul HBSex Specific Placental Accumulation and Behavioral Effects of Developmental Firemaster 550 Exposure in Wistar Rats. Sci Rep. 2017 Aug 2;7(1):7118.

Benjamin Neelon SE, White AJ, Vidal AC, Schildkraut JM, Murtha AP, Murphy SK, Kullman SW, Hoyo C. Maternal vitamin D, DNA methylation at imprint regulatory regions and offspring weight at birth, 1 year and 3 years. Int J Obes (Lond). 2017 Jul 5. [Epub ahead of print]

Countryman P, Fan Y, Gorthi A, Pan H, Strickland J, Kaur P, Wang X, Lin J, Lei X, White C, You C, Wirth N, Tessmer I, Piehler J, Riehn R, Bishop AJR, Tao YJ, Wang H. Cohesin SA2 is a sequence-independent DNA-binding protein that recognizes DNA replication and repair intermediates. The Journal of biological chemistry. 2018 January 19;293(3):1054-1069.

Green AJ, Planchart A. The neurological toxicity of heavy metals: A fish perspective. Comparative biochemistry and physiology. Toxicology & pharmacology : CBP. 2017 December 1.

Hashimoto K, Tsuji YArsenic-Induced Activation of the Homeodomain-Interacting Protein Kinase 2 (HIPK2) to cAMP-Response Element Binding Protein (CREB) Axis.
Journal of Molecular Biology. 2017 Jan 6;429(1):64-78

Hashimoto K, Majumdar R, Tsuji YNuclear lamins and progerin are dispensable for antioxidant Nrf2 response to arsenic and cadmium. Cell Signalling. 2017 May;33:69-78.

Hilton GM, Taylor AJ, Hussain S, Dandley EC, Griffith EH, Garantziotis S, Parsons GN, Bonner JC, Bereman MSMapping differential cellular protein response of mouse alveolar epithelial cells to multi-walled carbon nanotubes as a function of atomic layer deposition coating. Nanotoxicology. 2017 Apr;11(3):313-326. Epub 2017 Mar 13.

Ko AE, Jensen K, Schal C, Silverman J. Effects of foraging distance on macronutrient balancing and performance in the German cockroach Blattella germanica. The Journal of Experimental Biology. 2017 Jan 15;220(Pt 2):304-311.

LeBlanc S, Wilkins H, Li Z, Kaur P, Wang H, Erie DA. Using Atomic Force Microscopy to Characterize the Conformational Properties of Proteins and Protein-DNA Complexes That Carry Out DNA Repair. Methods in enzymology. 2017;592:187-212.

Luo Y, McCullough LE, Tzeng JY, Darrah T, Vengosh A, Maguire RL, Maity A, Samuel-Hodge C, Murphy SK, Mendez MA, Hoyo C. Maternal blood cadmium, lead and arsenic levels, nutrient combinations, and offspring birthweight. BMC Public Health. 2017 Apr 24;17(1):354.

McCullough LE, Miller EE, Calderwood LE, Shivappa N, Steck SE, Forman MR, Mendez M, Maguire R, Fuemmeler BF, Kollins SH, Bilbo S, Huang Z, Murtha AP, Murphy SK, Hébert JR, Hoyo C. Maternal inflammatory diet and adverse pregnancy outcomes: Circulating cytokines and genomic imprinting as potential regulators? Epigenetics.2017 Jul 5:0. [Epub ahead of print]

O’Donnell B, Huo L, Polli JR, Qiu L, Collier DN, Zhang B, Pan XFrom the Cover: ZnO Nanoparticles Enhanced Germ Cell Apoptosis in Caenorhabditis elegans, in Comparison with ZnCl2. Toxicological Sciences. 2017 Apr 1;156(2):336-343.

Pan H, Bilinovich SM, Kaur P, Riehn R, Wang H, Williams DC Jr. CpG and methylation-dependent DNA binding and dynamics of the methylcytosine binding domain 2 protein at the single-molecule level. Nucleic acids research. 2017 September 6;45(15):9164-9177.

Park SS, Skaar DAJirtle RLHoyo CEpigenetics, obesity and early-life cadmium or lead exposure Epigenomics. 2017 Jan;9(1):57-75. Epub 2016 Dec 16.

Patisaul HBEndocrine Disruption of Vasopressin Systems and Related Behaviors. Front Endocrinol (Lausanne). 2017 Jun 19;8:134.

Quinnies KM, Harris EP, Snyder RW, Sumner SS, Rissman EFDirect and transgenerational effects of low doses of perinatal di-(2-ethylhexyl) phthalate (DEHP) on social behaviors in mice. PLoS One. 2017 Feb 15;12(2):e0171977.

Reaves DK, Hoadley KA, Fagan-Solis KD, Jima DD, Bereman M, Thorpe L, Hicks J, McDonald D, Troester MA, Perou CM, Fleming JMNuclear Localized LSR: A Novel Regulator of Breast Cancer Behavior and Tumorigenesis. Molecular Cancer Research. 2017 Feb;15(2):165-178.

Schilling J, Nepomuceno AI, Planchart A, Yoder JA, Kelly RM, Muddiman DC, Daniels HV, Hiramatsu N, Reading BJ. Machine learning reveals sex-specific 17β-estradiol-responsive expression patterns in white perch (Morone americana) plasma proteins. Proteomics. 2015 August;15(15):2678-90

Sierras A, Schal CComparison of ingestion and topical application of insecticides against the common bed bug, Cimex lectularius (Hemiptera: Cimicidae). Pest Management Science. 2017 Mar;73(3):521-527.

Smith SK, Lee CA, Dausch ME, Horman BM, Patisaul HB, McCarty GS, Sombers LA. Simultaneous Voltammetric Measurements of Glucose and Dopamine Demonstrate the Coupling of Glucose Availability with Increased Metabolic Demand in the Rat Striatum. ACS Chem Neurosci. 2017 Feb 15;8(2):272-280.

Tilley SK, Reif DM, Fry RC. Incorporating ToxCast and Tox21 datasets to rank biological activity of chemicals at Superfund sites in North Carolina. Environment International. 2017 Apr;101:19-26.

Tokarz DA, Heffelfinger AK, Jima DD, Gerlach J, Shah RN, Rodriguez-Nunez I, Kortum AN, Fletcher AA, Nordone SK, Law JM, Heber S, Yoder JADisruption of Trim9 function abrogates macrophage motility in vivo. J Leukoc Biol. 2017 Oct 11.

Watson AT, Planchart A, Mattingly CJ, Winkler C, Reif DM, Kullman SW. From the Cover: Embryonic Exposure to TCDD Impacts Osteogenesis of the Axial Skeleton in Japanese medaka, Oryzias latipes. Toxicol Sci. 2017 Feb;155(2):485-496.

Will TR, Proaño SB, Thomas AM, Kunz LM, Thompson KC, Ginnari LA, Jones CH, Lucas SC, Reavis EM, Dorris DM, Meitzen J. Problems and Progress regarding Sex Bias and Omission in Neuroscience Research. eNeuro. 2017 November;4(6).

Zhang G, Roell KR, Truong L, Tanguay RL, Reif DMA data-driven weighting scheme for multivariate phenotypic endpoints recapitulates zebrafish developmental cascades. Toxicology and Applied Pharmacology. 2017 Jan 1;314:109-117

2016

Arambula SE, Belcher SM, Planchart A, Turner SD, Patisaul HBImpact of Low Dose Oral Exposure to Bisphenol A (BPA) on the Neonatal Rat Hypothalamic and Hippocampal Transcriptome: A CLARITY-BPA Consortium Study. Endocrinology. 2016 Oct;157(10):3856-3872. Epub 2016 Aug 29.

Auerbach S, Filer D, Reif D, Walker V, Holloway AC, Schlezinger J, Srinivasan S, Svoboda D, Judson R, Bucher JR, Thayer KA. Prioritizing Environmental Chemicals for Obesity and Diabetes Outcomes Research: A Screening Approach Using ToxCast™ High-Throughput Data. Environmental Health Perspectives. 2016 Aug;124(8):1141-54.

Benarroch-Popivker D, Pisano S, Mendez-Bermudez A, Lototska L, Kaur P, Bauwens S, Djerbi N, Latrick CM, Fraisier V, Pei B, Gay A, Jaune E, Foucher K, Cherfils-Vicini J, Aeby E, Miron S, Londoño-Vallejo A, Ye J, Le Du MH, Wang H, Gilson E, Giraud-Panis MJ. TRF2-Mediated Control of Telomere DNA Topology as a Mechanism for Chromosome-End Protection. Molecular Cell. 2016 Jan 21;61(2):274-86.

Bereman MS, Beri J, Sharma V, Nathe C, Eckels J, MacLean B, MacCoss MJ. An Automated Pipeline to Monitor System Performance in Liquid Chromatography-Tandem Mass Spectrometry Proteomic Experiments. Journal of Proteome Research. 2016 Dec 2;15(12):4763-4769

Cao J, Dorris DM, Meitzen JNeonatal Masculinization Blocks Increased Excitatory Synaptic Input in Female Rat Nucleus Accumbens Core. Endocrinology. 2016 Aug;157(8):3181-96.

DeVries ZC, Mick R, Schal CFeel the heat: activation, orientation and feeding responses of bed bugs to targets at different temperatures. Journal of Experimental Biology. 2016 Dec 1;219(Pt 23):3773-3780.

Duke KS, Taylor-Just AJ, Ihrie MD, Shipkowski KA, Thompson EA, Dandley EC, Parsons GN, Bonner JCSTAT1-dependent and -independent pulmonary allergic and fibrogenic responses in mice after exposure to tangled versus rod-like multi-walled carbon nanotubes. Part Fibre Toxicol. 2017 Jul 17;14(1):26

Dutta V, Lee S, Ward TJ, Orwig N, Altermann E, Jima D, Parsons C, Kathariou SDraft Genome Sequences of Two Historical Listeria monocytogenes Strains from Human Listeriosis Cases in 1933. Genome Announcements. 2016 Dec 8;4(6). pii: e01364-16.

Fuemmeler BF, Lee CT, Soubry A, Iversen ES, Huang Z, Murtha AP, Schildkraut JM, Jirtle RL, Murphy SK, Hoyo CDNA Methylation of Regulatory Regions of Imprinted Genes at Birth and Its Relation to Infant Temperament. Genetics Epigenetics. 2016 Nov 28;8:59-67

Grondin CJ, Davis AP, Wiegers TC, King BL, Wiegers JA, Reif DMHoppin JA, Mattingly CJAdvancing Exposure Science through Chemical Data Curation and Integration in the Comparative Toxicogenomics Database. Environmental Health Perspective. 2016 Oct;124(10):1592-1599.

Gutierrez KS, LePrevost CEClimate Justice in Rural Southeastern United States: A Review of Climate Change Impacts and Effects on Human Health. International Journal of Environmental Research and Public Health. 2016 Feb 3;13(2):189.

Kaur P, Wu D, Lin J, Countryman P, Bradford KC, Erie DA, Riehn R, Opresko PL, WangHEnhanced electrostatic force microscopy reveals higher-order DNA looping mediated by the telomeric protein TRF2. Scientific Reports. 2016 Feb 9;6:20513.

Ko AE, Bieman DN, Schal C, Silverman J. Insecticide resistance and diminished secondary kill performance of bait formulations against German cockroaches (Dictyoptera: Blattellidae). Pest Manag Sci. 2016 Sep;72(9):1778-84.

Lin J, Countryman P, Chen H, Pan H, Fan Y, Jiang Y, Kaur P, Miao W, Gurgel G, You C, Piehler J, Kad NM, Riehn R, Opresko PL, Smith S, Tao YJ, Wang HFunctional interplay between SA1 and TRF1 in telomeric DNA binding and DNA-DNA pairing. Nucleic Acids Research. 2016 Jul 27;44(13):6363-76.

Matos YK, Schal CLaboratory and Field Evaluation of Zyrox Fly Granular Bait Against Asian and German Cockroaches (Dictyoptera: Blattellidae). Journal Economic Entomology. 2016 Aug;109(4):1807-12.

Nye MD, King KE, Darrah TH, Maguire R, Jima DD, Huang Z, Mendez MA, Fry RC, Jirtle RL, Murphy SK, Hoyo CMaternal blood lead concentrations, DNA methylation of MEG3 DMR regulating the DLK1/MEG3 imprinted domain and early growth in a multiethnic cohort. Environmental Epigenetics. Feb 2016;2(1).

Planchart AMattingly CJ, Allen D, Ceger P, Casey W, Hinton D, Kanungo J, Kullman SW, Tal T, Bondesson M, Burgess SM, Sullivan C, Kim C, Behl M, Padilla S, Reif DM, Tanguay RL, Hamm J. Advancing toxicology research using in vivo high throughput toxicology with small fish models. ALTEX. Jun 2016;33(4):435-452.

Rebuli ME, Gibson P, Rhodes CL, Cushing BS, Patisaul HB. Sex differences in microglial colonization and vulnerabilities to endocrine disruption in the social brain. Gen Comp Endocrinol. 2016 Nov 1;238:39-46.

Reif DM, Truong L, Mandrell D, Marvel S, Zhang G, Tanguay RL. High-throughput characterization of chemical-associated embryonic behavioral changes predicts teratogenic outcomes. Archives of Toxicology. 2016 Jun;90(6):1459-70.

Wu D, Kaur P, Li ZM, Bradford KC, Wang H, Erie DA. Visualizing the Path of DNA through Proteins Using DREEM Imaging. Molecular Cell. 2016 Jan 21;61(2):315-23.

Zhang G, Marvel S, Truong L, Tanguay RL, Reif DMAggregate entropy scoring for quantifying activity across endpoints with irregular correlation structure. Reproductive Toxicology. 2016 Jul;62:92-9.

2015

Ducharme NA, Reif DM, Gustafsson JA, Bondesson M. Comparison of toxicity values across zebrafish early life stages and mammalian studies: Implications for chemical testing.
Reproductive Toxicology. 2015 Aug 1;55:3-10.

Hall JR, Messenger ZJ, Tam HW, Phillips SL, Recio L, Smart RCLong noncoding RNA lincRNA-p21 is the major mediator of UVB-induced and p53-dependent apoptosis in keratinocytes. Cell Death & Disease. 2015 Mar 19;6:e1700.

King KE, Darrah TH, Money E, Meentemeyer R, Maguire RL, Nye MD, Michener L, Murtha AP, Jirtle R, Murphy SK, Mendez MA, Robarge W, Vengosh A, Hoyo C.
Geographic clustering of elevated blood heavy metal levels in pregnant women. BMC Public Health. 2015 Oct 9;15:1035.

Kollitz EM, Zhang G, Hawkins MB, Whitfield GK, Reif DM, Kullman SWMolecular cloning, functional characterization, and evolutionary analysis of vitamin D receptors isolated from basal vertebrates. PLoS One. 2015 Apr 9;10(4)

Langley RL, Kao Y, Mort SA, Bateman A, Simpson BD, Reich BJAdverse neurodevelopmental effects and hearing loss in children associated with manganese in well water, North Carolina, USA. Journal of Environmental and Occupational Science Apr 2015;4 (2):62-69.

Parikh D, Fouquerel E, Murphy CT, Wang H, Opresko PL. Telomeres are partly shielded from ultraviolet-induced damage and proficient for nucleotide excision repair of photoproducts.
Nature Communications. 2015 Sep 9;6:8214.

Porter CJ, Bereman MSData-independent-acquisition mass spectrometry for identification of targeted-peptide site-specific modifications. Analytical Bioanalytical Chemistry 2015 Sep;407(22):6627-35.

Rebuli ME, Camacho L, Adonay ME, Reif DM, Aylor DLPatisaul HBImpact of Low-Dose Oral Exposure to Bisphenol A (BPA) on Juvenile and Adult Rat Exploratory and Anxiety Behavior: A CLARITY-BPA Consortium Study. Toxicological Sciences. 2015 Dec;148(2):341-54.